Package: gemma2 0.1.3

gemma2: GEMMA Multivariate Linear Mixed Model

Fits a multivariate linear mixed effects model that uses a polygenic term, after Zhou & Stephens (2014) (<https://www.nature.com/articles/nmeth.2848>). Of particular interest is the estimation of variance components with restricted maximum likelihood (REML) methods. Genome-wide efficient mixed-model association (GEMMA), as implemented in the package 'gemma2', uses an expectation-maximization algorithm for variance components inference for use in quantitative trait locus studies.

Authors:Frederick Boehm [aut, cre]

gemma2_0.1.3.tar.gz
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gemma2.pdf |gemma2.html✨
gemma2/json (API)
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Bug tracker:https://github.com/fboehm/gemma2/issues

On CRAN:

em-algorithmgeneticsmixed-models

9 exports 11 stars 1.70 score 2 dependencies 1 dependents 10 scripts 174 downloads

Last updated 4 years agofrom:ea3052f860. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:calc_omegacalc_qicalc_XHiYcenter_kinshipeigen_proceigen2MphEMstagger_matsupdate_u

Dependencies:latticeMatrix