Type: Package
Package: qtl2pleio
Title: Testing Pleiotropy in Multiparental Populations
Version: 1.4.4
Authors@R: 
    person(given = "Frederick J",
           family = "Boehm",
           role = c("aut", "cre"),
           email = "frederick.boehm@gmail.com",
           comment = c(ORCID = "0000-0002-1644-5931"))
Description: We implement an adaptation of Jiang & Zeng's (1995)
        <doi:10.1093/genetics/140.3.1111> likelihood ratio test for
        testing the null hypothesis of pleiotropy against the
        alternative hypothesis, two separate quantitative trait loci.
        The test differs from that in Jiang & Zeng (1995) and that in
        Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that
        our test accommodates multiparental populations.
License: MIT + file LICENSE
URL: https://github.com/fboehm/qtl2pleio
BugReports: https://github.com/fboehm/qtl2pleio/issues
Depends: R (>= 3.2)
Imports: dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble,
        parallel
Suggests: covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
        qtl2, parallelly
LinkingTo: Rcpp, RcppEigen
Encoding: UTF-8
Language: en-US
NeedsCompilation: yes
RoxygenNote: 7.3.3
Repository: https://fboehm.r-universe.dev
Date/Publication: 2026-05-29 13:12:10 UTC
RemoteUrl: https://github.com/fboehm/qtl2pleio
RemoteRef: HEAD
RemoteSha: d1dfcf7ab672e918c23f465524f42fb4e33e053a
Packaged: 2026-10-08 08:09:08 UTC; root
Author: Frederick J Boehm [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1644-5931>)
Maintainer: Frederick J Boehm <frederick.boehm@gmail.com>